Born to Pastor John and Saramma Ayyapilla as the second oldest among 5 boys and 4 girls. Pastor Thomas's father Ayyapilla Sar (Pastor P.V. John) came from a Hindu Brahmin background, came to know the Lord through a native missionary (Kappiar Upadesi) who taught him John 3:16. He attended Seampore University and earned a Diploma in Theology. He became the principal of the IPC free School. Following his marriage to Aleyamma (Keezhvaipur, Mallappally), he left for Australia for higher studies. He went to England from Australia and to the U.S, where he attended Wheaton College (Chicago) and got a Master's degree in Comparative Religion. He taught at Wheaton for a short time before returning back to India in 1952. Before he went back to India, he was instrumental in bringing the then three senior IPC pastors, Pastor K.E. Abraham, K.C. Cherian, and P.M. Samuel to the U.S. He also traveled with Pastor K.E. Abraham and interpreted for him across the U.S.
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